:: DESCRIPTION
MetaCon is a novel tool for unsupervised metagenomic contig binning based on probabilistic k-mers statistics and coverage.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics, 20 (Suppl 9), 367 2019 Nov 22
MetaCon: Unsupervised Clustering of Metagenomic Contigs With Probabilistic K-Mers Statistics and Coverage
Jia Qian, Matteo Comin
:: DESCRIPTION
PC-select calculates GWAS association statistics using a data-adaptive GRM that improves power over standard mixed models while simultaneously avoiding confounding from population stratification.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Genetics. 2014 Jul;197(3):1045-9. doi: 10.1534/genetics.114.164285. Epub 2014 Apr 29.
Improving the power of GWAS and avoiding confounding from population stratification with PC-Select.
Tucker G, Price AL, Berger B
:: DESCRIPTION
Phylostat calculates several statistics from your phylogenetic tree (e.g., number of polytomies, total tree distance, etc.).
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
DIST is a software program for directly imputing the normally distributed summary statistics of unmeasured SNPs in a GWAS/meta-analysis without first imputing subject level genotypes.
DISTMIX is a very fast and novel software program for Directly Imputing summary STatistics (two-tailed Z-scores) for unmeasured SNPs from MIXed ethnicity cohorts using measured SNP summary data (including cohort allele frequencies) from the cohorts and external reference populations such as 1000 Genomes data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2013 Nov 15;29(22):2925-7. doi: 10.1093/bioinformatics/btt500. Epub 2013 Aug 28.
DIST: direct imputation of summary statistics for unmeasured SNPs.
Lee D1, Bigdeli TB, Riley BP, Fanous AH, Bacanu SA.
DISTMIX: Direct imputation of summary statistics for unmeasured SNPs from mixed ethnicity cohorts.
Lee D, Bigdeli TB, Williamson VS, Vladimirov VI, Riley BP, Fanous AH, Bacanu SA.
Bioinformatics. 2015 Jun 9. pii: btv348.
:: DESCRIPTION
SeqCNVCBS is for the use of detecting Copy Number Variation (CNV) using sequencing data. Matched-samples of control and case (normal and tumor) are required. The algorithm uses a scan statistics to detect windows of rate differences in two non-homogeneous Poisson Processes.
::DEVELOPER
Jeremy J. Shen , Nancy R. Zhang
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
SMA (Statistics for Microarray Analysis) is a collection of simple R functions that were used in the Microarray Analysis.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Sandrine Dudoit, Yee Hwa Yang, Matt Callow and Terry Speed
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments.
:: DESCRIPTION
ARIADNE is a package of two programs, ariadne and prospero, that compare protein sequences and profiles using the Smith-Waterman algorithm, and assesses statistical significance
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Mott, 2000,
“Accurate Formula for P-values of gapped local sequence and profile alignments”
J. Mol Biol. 300:649-659
:: DESCRIPTION
Stat-200 is a remarkably comprehensive general statistics package. It incorporates all the descriptive statistics, parametric and non-parametric statistical tests, graphics and data transforms you will need for processing, analyzing and presenting data. Parametric tests and procedures in Stat-200 total 60 and there are 66 non-parametric tests and procedures and 30 different descriptive statistics. ANOVA is comprehensive and includes general N factor analysis. Many unusual procedures are included e.g. survival analysis. All tests have associated information windows which give literature references and other facts to assist in getting the right one for the job. Probabilities are calculated directly so there is no need to use tables
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
TreeStat is an application that can process a set of trees in a PHYLIP or NEXUS format tree file and calculate a number of summary statistics for each. These are saved in a tab-delimited file for analysis in Tracer or statistics packages.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
