:: DESCRIPTION
SaRa is a program to detect chromosome copy number variations.
::DEVELOPER
The Collaborative Center for Statistics in Science(C2S2)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Niu and Zhang.
The screening and ranking algorithm to detect DNA copy number variations.
Ann. Appl. Stat. 6,1306-1326, (2012).
:: DESCRIPTION
modSaRa is a program using modified screening and ranking algorithm to detect chromosome copy number variations. It is an optimal and accurate approach solving practical issues regarding CNV detection.
::DEVELOPER
The Collaborative Center for Statistics in Science(C2S2)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2014 Dec 25. pii: btu850. [Epub ahead of print]
Modified Screening and Ranking Algorithm for Copy Number Variation Detection.
Xiao F, Min X, Zhang H
:: DESCRIPTION
SeqCNVCBS is for the use of detecting Copy Number Variation (CNV) using sequencing data. Matched-samples of control and case (normal and tumor) are required. The algorithm uses a scan statistics to detect windows of rate differences in two non-homogeneous Poisson Processes.
::DEVELOPER
Jeremy J. Shen , Nancy R. Zhang
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
