MetaCon – Unsupervised Clustering of Metagenomic Contigs with Probabilistic k-mers Statistics and Coverage

MetaCon

:: DESCRIPTION

MetaCon is a novel tool for unsupervised metagenomic contig binning based on probabilistic k-mers statistics and coverage.

::DEVELOPER

Matteo Comin

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

MetaCon

:: MORE INFORMATION

Citation

BMC Bioinformatics, 20 (Suppl 9), 367 2019 Nov 22
MetaCon: Unsupervised Clustering of Metagenomic Contigs With Probabilistic K-Mers Statistics and Coverage
Jia Qian, Matteo Comin

ProAlign 0.5a3 – Probabilistic Multiple Alignment program

ProAlign 0.5a3

:: DESCRIPTION

ProAlign is a software implementing a multiple-alignment method that combines a Hidden Markov model (HMM), a progressive alignment algorithm, and a probabilistic character substitution model. Check below for much additional information.

::DEVELOPER

Michel C. Milinkovitch’s lab

:: SCREENSHOTS

ProAlign

:: REQUIREMENTS

  • MacOsX / Linux / Windows
  • Java

:: DOWNLOAD

 ProAlign

:: MORE INFORMATION

Citation

Ari Löytynoja and Michel C. Milinkovitch*
A hidden Markov model for progressive multiple alignment
Bioinformatics, 19:1505-1513 (2003)