MMC 0.2 – Statistical Model for calculating Gene Coexpression

MMC 0.2

:: DESCRIPTION

MMC (mixed model coexpression) is a statistical model for calculating gene coexpression which models coexpression within a mixed model framework.

::DEVELOPER

Nick Furlotte

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

MMC

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Jul 1;27(13):i288-94. doi: 10.1093/bioinformatics/btr221.
Mixed-model coexpression: calculating gene coexpression while accounting for expression heterogeneity.
Furlotte NA, Kang HM, Ye C, Eskin E.

:: DESCRIPTION

NoLogo is a new generative model that can account for a large diversity of Nuclear Export Signals (NESs).

::DEVELOPER

Alan Moses’ Computational Biology Lab,University of Toronto

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

NoLogo

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2018 Feb 27;19(1):65. doi: 10.1186/s12859-018-2076-7.
NoLogo: a new statistical model highlights the diversity and suggests new classes of Crm1-dependent nuclear export signals.
Liku ME, Legere EA, Moses AM

:: DESCRIPTION

454sim is a software for simulation of 454 data at high speed and accuracy.

::DEVELOPER

IFM Bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

454sim

:: MORE INFORMATION

Citation

BMC Res Notes. 2011 Oct 26;4:449. doi: 10.1186/1756-0500-4-449.
An efficient simulator of 454 data using configurable statistical models.
Lysholm F, Andersson B, Persson B.