:: DESCRIPTION
FTG is aweb server for locating probable protein coding region in nucleotide sequence using fourier tranform approach
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Issac, B., Singh, H., Kaur, H. and Raghava, G.P.S. (2002)
Locating probable genes using fourier transform approach.
Bioinformatics 18:196
:: DESCRIPTION
ProtMod is a protein modeling server. Its task is to predicts 3-dimensional structures of proteins based on their sequences. Instead of generating only one model for a given protein, ProtMod produces a list of protein models and orders them by different model evaluation scores.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
NO
:: MORE INFORMATION
:: DESCRIPTION
AIDA is a tool that can identify domains in multi-domain proteins and then predict their 3D structures and relative spatial arrangements.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: MORE INFORMATION
Citation:
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W308-13. doi: 10.1093/nar/gku369. Epub 2014 May 15.
AIDA: ab initio domain assembly server.
Xu D, Jaroszewski L, Li Z, Godzik A
:: DESCRIPTION
bSiteFinder is a web server for indentifying protein-binding sites.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation:
bSiteFinder, an improved protein-binding sites prediction server based on structural alignment: more accurate and less time-consuming.
Gao J, Zhang Q, Liu M, Zhu L, Wu D, Cao Z, Zhu R.
J Cheminform. 2016 Jul 11;8:38. doi: 10.1186/s13321-016-0149-z.
:: DESCRIPTION
The design of FALCON@home is based on the observation that a structural template, especially for remote homologous proteins, consists of conserved regions interweaved with highly-variable regions.
::DEVELOPER
Bioinformatics Lab, Institute of Computing Technology Chinese Academy of Sciences
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition.
Wang C, Zhang H, Zheng WM, Xu D, Zhu J, Wang B, Ning K, Sun S, Li SC, Bu D.
Bioinformatics. 2015 Oct 10. pii: btv581.
:: DESCRIPTION
RNAex is an RNA secondary structure prediction enhanced by high-throughput experimental data
::DEVELOPER
Lu Lab, School of Life Sciences, Tsinghua University, China
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing data.
Wu Y, Qu R, Huang Y, Shi B, Liu M, Li Y, Lu ZJ.
Nucleic Acids Res. 2016 May 2. pii: gkw362.
:: DESCRIPTION
ncFANs (non-coding RNA Function Annotation Server) re-annotates microarray data and predict ncRNAs functions of interest to the user/functions of Your Favorite ncRNA (YFN). The ncFANs services presently includes to two organisms and three microarray platforms. This is the first web service for the function annotation of long ncRNAs. We believe it will be an important tool for researchers to further analyze the roles of long ncRNAs in various biological processes.
::DEVELOPER
Qi Liao, Hui Xiao,Institute of Computing Technology,China
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
ncFANs: a web server for functional annotation of long non-coding RNAs Nucl.
Acids Res. (2011) 39 (suppl 2): W118-W124.
Qi Liao, Hui Xiao, Dechao Bu, Chaoyong Xie, Ruoyu Miao, Haitao Luo, Guoguang Zhao, Kuntao Yu, Haitao Zhao, Geir Skogerb?, Runsheng Chen, Zhongdao Wu, Changning Liu,; Yi Zha
:: DESCRIPTION
SARA is a program for pair-wise alignment of RNA structures as a web server for structure-based RNA function assignment. The SARA server relies on the SARA program, which aligns two RNA structures based on a unit-vector root-mean-square approach. The likely accuracy of the SARA alignments is assessed by three different P-values estimating the statistical significance of the sequence, secondary structure and tertiary structure identity scores, respectively.
::DEVELOPER
Structural Bioinformatics Unit
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Capriotti E, Marti-Renom MA. (2009).
SARA: a server for function annotation of RNA structures.
Nucleic Acids Research. 37 (Web Server issue): W260-W265.
:: DESCRIPTION
dnaMATE is a software which calculates a consensus melting temperature (Tm) for any given short DNA sequence (16-30 nts).
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Panjkovich, A., Norambuena, T. and Melo, F. (2005)
dnaMATE: a consensus melting temperature prediction server for short DNA sequences.
Nucleic Acids Research, 33, 570-572.
:: DESCRIPTION
Sight, a java-based package that provides a user-friendly interface to create and connect agents for automatic genomic data mining for individual purposes.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Audrius Meskauskas., Lehmann-Horn F., Jurkat-Rott K (2004).
Sight: automating genomic data-mining without programming skills.
Bioinformatics, 20: 1718-1720.