ProBiS 2.4.2 – Protein Binding Sites Detection

ProBiS 2.4.2

:: DESCRIPTION

ProBiS is a web server and a computer program for the detection of structurally similar protein binding sites and pairwise local structural alignment.

::DEVELOPER

ProBiS team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/ Web browser that support HTML5.

:: DOWNLOAD

ProBiS

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W436-40. doi: 10.1093/nar/gkq479. Epub 2010 May 26.
ProBiS: a web server for detection of structurally similar protein binding sites.
Konc J1, Janezic D.

J Comput Chem. 2012 Oct 15;33(27):2199-203. doi: 10.1002/jcc.23048. Epub 2012 Jun 20.
Parallel-ProBiS: fast parallel algorithm for local structural comparison of protein structures and binding sites.
Konc J1, Depolli M, Trobec R, Rozman K, Janežič D.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W215-20. doi: 10.1093/nar/gku460. Epub 2014 May 26.
ProBiS-ligands: a web server for prediction of ligands by examination of protein binding sites.
Konc J1, Janežič D

ChIPseqR 1.46.0 – Identifying Protein Binding Sites in High-Throughput Sequencing Data

ChIPseqR 1.46.0

:: DESCRIPTION

ChIPseqR is an algorithm for the analysis of nucleosome positioning and histone modification ChIP-seq experiments.

::DEVELOPER

CSIRO Transformational Bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows /MacOsX
R package
BioConductor

:: DOWNLOAD

ChIPseqR

:: MORE INFORMATION

Citation

ChIPseqR: analysis of ChIP-seq experiments.
Humburg P, Helliwell CA, Bulger D, Stone G.
BMC Bioinformatics. 2011 Jan 31;12:39. doi: 10.1186/1471-2105-12-39.

CanBind – Exploring Protein Binding sites Mutated in Cancer

CanBind

:: DESCRIPTION

CanBind is a pipeline to identify genes significantly mutated in cancer

::DEVELOPER

Mona Singh

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/ MacOsX

:: DOWNLOAD

CanBind

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2014 Feb;42(3):e18. doi: 10.1093/nar/gkt1305. Epub 2013 Dec 19.
Interaction-based discovery of functionally important genes in cancers.
Ghersi D1, Singh M.

bSiteFinder – Protein-binding Sites Prediction Server

bSiteFinder

:: DESCRIPTION

bSiteFinder is a web server for indentifying protein-binding sites.

::DEVELOPER

bSiteFinder team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation:

bSiteFinder, an improved protein-binding sites prediction server based on structural alignment: more accurate and less time-consuming.
Gao J, Zhang Q, Liu M, Zhu L, Wu D, Cao Z, Zhu R.
J Cheminform. 2016 Jul 11;8:38. doi: 10.1186/s13321-016-0149-z.