ProtMod is a protein modeling server. Its task is to predicts 3-dimensional structures of proteins based on their sequences. Instead of generating only one model for a given protein, ProtMod produces a list of protein models and orders them by different model evaluation scores.
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W308-13. doi: 10.1093/nar/gku369. Epub 2014 May 15. AIDA: ab initio domain assembly server.
Xu D, Jaroszewski L, Li Z, Godzik A
The design of FALCON@home is based on the observation that a structural template, especially for remote homologous proteins, consists of conserved regions interweaved with highly-variable regions.
::DEVELOPER
Bioinformatics Lab, Institute of Computing Technology Chinese Academy of Sciences
ncFANs (non-coding RNA Function Annotation Server) re-annotates microarray data and predict ncRNAs functions of interest to the user/functions of Your Favorite ncRNA (YFN). The ncFANs services presently includes to two organisms and three microarray platforms. This is the first web service for the function annotation of long ncRNAs. We believe it will be an important tool for researchers to further analyze the roles of long ncRNAs in various biological processes.
::DEVELOPER
Qi Liao, Hui Xiao,Institute of Computing Technology,China
SARA is a program for pair-wise alignment of RNA structures as a web server for structure-based RNA function assignment. The SARA server relies on the SARA program, which aligns two RNA structures based on a unit-vector root-mean-square approach. The likely accuracy of the SARA alignments is assessed by three different P-values estimating the statistical significance of the sequence, secondary structure and tertiary structure identity scores, respectively.
Sight, a java-based package that provides a user-friendly interface to create and connect agents for automatic genomic data mining for individual purposes.