:: DESCRIPTION
LSim superposes macromolecular electron densities and computes a structural similarity score. LSim computations scale linearly with the size of the molecules being compared.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Constans, P.
Linear Scaling Approaches to Quantum Macromolecular Similarity: Evaluating the Similarity Function.
J. Comput. Chem. 23, 1305-1313, 2002
:: DESCRIPTION
NePhe （Network RNAi Phenotype） is intended to implement a network-based integrative approach to prioritize reliable hits in genome-wide screens
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Wang L, Tu Z, Sun FZ (2009)
A network-based integrative approach to prioritize reliable hits from multiple genome-wide RNAi screens in Drosophila.
BMC Genomics 10:220.
:: DESCRIPTION
Quasar (quality of sequence–structure alignments ranking) is a flexible tool for calculating quality scores of sequence-structure alignments. The main reason for its flexibility is that you do not have to write any additional Java code in order to combine single alignment quality scores (also called scoring schemes) to scoring function (done by score conductors) but you only have to provide the system a XML – like configuration file.
::DEVELOPER
Institut für Informatik, Ludwig-Maximilians-Universität München
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Fabian Birzele, Jan Gewehr, Ralf Zimmer.
QUASAR–scoring and ranking of sequence-structure alignments.
Bioinformatics, vol 21, no. 24, pp. 4425–4426, Dec 2005.
:: DESCRIPTION
QSCORE is a quality scoring program that compares two multiple sequence alignments: an alignment to be evaluated (the “test” alignment) and a second alignment that is believed to be correct (the “reference” alignment).
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
N/A
