:: DESCRIPTION
dsCheck is a web-based online software for estimating off-target effects caused by the long double-stranded RNA (dsRNA) used in RNAi studies.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation:
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W589-91.
dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference.
Naito Y, Yamada T, Matsumiya T, Ui-Tei K, Saigo K, Morishita S.
:: DESCRIPTION
RNAinteract estimates genetic interactions from multi-dimensional read-outs like features extracted from images.
RNAinteractMAPK is a software of Mapping of Signalling Networks through Synthetic Genetic Interaction Analysis by RNAi
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Thomas Horn, Thomas Sandmann, Bernd Fischer, Elin Axelsson, Wolfgang Huber, Michael Boutros,
Mapping of signaling networks through synthetic genetic interaction analysis by RNAi,
Nature methods 8 (4), 341-346, 2011.
:: DESCRIPTION
si-Fi (siRNA Finder) is a Software for RNAi (RNA interference) off-target prediction.The software is designed for checking long-double stranded RNAi constructs for target specificity and silencing efficiency. It can be used also to select sequence regions suitable for designing RNAi constructs. The program provides clear tabular and graphical outputs.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Lück S, Kreszies T, Strickert M, Schweizer P, Kuhlmann M, Douchkov D.
siRNA-Finder (si-Fi) Software for RNAi-Target Design and Off-Target Prediction.
Front Plant Sci. 2019 Aug 15;10:1023. doi: 10.3389/fpls.2019.01023. PMID: 31475020; PMCID: PMC6704232.
:: DESCRIPTION
cellHTS2 is a software package implemented in Bioconductor/R to analyze cell-based high-throughput RNAi screens.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genome Biol. 2006;7(7):R66.
Analysis of cell-based RNAi screens.
Boutros M, Brás LP, Huber W.
Pelz., O., Gilsdorf, M., Boutros, M. (2010).
web cellHTS2: A web application for the analysis of high-throughput screening data.
BMC Bioinformatics 11:185.
:: DESCRIPTION
E-RNAi is a tool for the design and evaluation of RNAi reagents for a variety of species. It can be used to design and evaluate long dsRNAs (including esiRNAs) as well as siRNAs.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
E-RNAi: a web application for the multi-species design of RNAi reagents–2010 update.
Thomas Horn; Michael Boutros
Nucl. Acids Res. (2010) 38 (suppl 2): W332-W339. doi: 10.1093/nar/gkq317
:: DESCRIPTION
SbacHTS is a software for visualization, estimation and correction of spatial background noises of RNAi screening experiment results.
::DEVELOPER
The Quantitative Biomedical Research Center
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2013 Sep 1;29(17):2218-20. doi: 10.1093/bioinformatics/btt358. Epub 2013 Jun 28.
SbacHTS: spatial background noise correction for high-throughput RNAi screening.
Zhong R1, Kim MS, White MA, Xie Y, Xiao G.
:: DESCRIPTION
NePhe （Network RNAi Phenotype） is intended to implement a network-based integrative approach to prioritize reliable hits in genome-wide screens
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Wang L, Tu Z, Sun FZ (2009)
A network-based integrative approach to prioritize reliable hits from multiple genome-wide RNAi screens in Drosophila.
BMC Genomics 10:220.