Biogem 1.3.6 – Bioinformatics Software Development Environment for the Ruby

Biogem 1.3.6

:: DESCRIPTION

Biogem provides a set of tools for those Bioinformaticans who want to start coding an application, or a library for using/extending BioRuby’s core library and sharing the code as a gem through rubygems.org. BioGem helps Bioinformaticians start developing plugins/modules for BioRuby creating a scaffold and a gem package

::DEVELOPER

Biogem team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/windows/MacOsX
  • Ruby

:: DOWNLOAD

 Biogem

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Apr 1;28(7):1035-7. doi: 10.1093/bioinformatics/bts080. Epub 2012 Feb 12.
Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.
Bonnal RJ1, Aerts J, Githinji G, Goto N, MacLean D, Miller CA, Mishima H, Pagani M, Ramirez-Gonzalez R, Smant G, Strozzi F, Syme R, Vos R, Wennblom TJ, Woodcroft BJ, Katayama T, Prins P.

mspire 0.10.8 – Mass Spectrometry Proteomics in Ruby

mspire 0.10.8

:: DESCRIPTION

Mspire is a full featured library for working with mass spectrometry data, particularly proteomic, metabolomic and lipidomic data sets. It aims to be fast, robust, and beautiful.

::DEVELOPER

Prince Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX/Windows
  • Ruby

:: DOWNLOAD

 mspire

:: MORE INFORMATION

Citation

Prince JT, Marcotte EM.
mspire: mass spectrometry proteomics in Ruby.
Bioinformatics. 2008 Dec 1;24(23):2796-7.