SCARF – Scaffolded and Corrected Assembly of Roche 454

SCARF

:: DESCRIPTION

SCARF is a next-gen sequence assembly tool for evolutionary genomics. Designed especially for assembling 454 EST sequences against high quality reference sequences from related species.

::DEVELOPER

The Dlugosch Lab @ The University of Arizona

:: SCREENSHOTS

N/A

: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

  SCARF

:: MORE INFORMATION

Citation

Bioinformatics. 2009 Feb 15;25(4):535-6. doi: 10.1093/bioinformatics/btp011. Epub 2009 Jan 6.
SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses.
Barker MS1, Dlugosch KM, Reddy AC, Amyotte SN, Rieseberg LH.

iAssembler 1.3.2 – de novo Assembly of Roche-454/Sanger Transcriptome Sequences

iAssembler 1.3.2

:: DESCRIPTION

iAssembler is a standalone package to assemble ESTs generated using Sanger and/or Roche-454 pyrosequencing technologies into contigs.

::DEVELOPER

Fei Bioinformatics Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  •  Linux
  • Perl
  • Bioperl

:: DOWNLOAD

 iAssembler

:: MORE INFORMATION

Citation

Zheng Y, Zhao L, Gao J, Fei Z. (2011)
iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences.
BMC Bioinformatics 12:453