ATHENA 1.1.0 – Discover Epistasis among Quantitative Trait Loci

ATHENA 1.1.0

:: DESCRIPTION

ATHENA (the Analysis Tool for Heritable and Environmental Network Associations) results in clear performance improvements for discovering gene-gene interactions that influence human traits. We employed an alternative tree-based crossover, backpropagation for locally fitting neural network weights, and incorporation of domain knowledge obtainable from publicly accessible biological databases for initializing the search for gene-gene interactions. We tested these modifications in silico using simulated datasets.

::DEVELOPER

Ritchie Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 ATHENA

:: MORE INFORMATION

Citation:

ATHENA: A knowledge-based hybrid backpropagation-grammatical evolution neural network algorithm for discovering epistasis among quantitative trait Loci.
Turner SD, Dudek SM, Ritchie MD.
BioData Min. 2010 Sep 27;3(1):5.

PROC QTL 2.0 – SAS Procedure for Mapping Quantitative Trait Loci

PROC QTL 2.0

:: DESCRIPTION

PROC QTL is a user defined SAS (Statistical analysis system) procedure for mapping quantitative trait loci (QTL).

::DEVELOPER

Xu’s Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 PROC QTL

:: MORE INFORMATION

Citation

Zhiqiu Hu and Shizhong Xu (2009).
PROC QTL – A SAS Procedure for Mapping Quantitative Trait Loci.
International Journal of Plant Genomics 2009: 3 doi:10.1155/2009/141234

eQTNMiner 2.0.0 – High-resolution Mapping of Quantitative Trait Loci

eQTNMiner 2.0.0

:: DESCRIPTION

eQTNMiner (expression quantitative trait nucleotide Miner) is a computational package to carry out high-resolution mapping of quantitative trait loci (QTL) for high-dimensional genomic features like gene expression, epigenetic modifications, etc… and much more.

::DEVELOPER

Jean-Baptiste Veyrieras

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX
  • GDL

:: DOWNLOAD

 eQTNMiner

:: MORE INFORMATION

MapQTL® 6 – Mapping of Quantitative Trait Loci in Experimental Populations of Diploid Species

MapQTL® 6

:: DESCRIPTION

MapQTL® is a software for the mapping of quantitative trait loci in experimental populations of diploid species.Analyse your QTL experiments with interval mapping, with the powerful MQM mapping (=composite interval mapping), or with a nonparametric method. MapQTL is easy to use, is very fast and presents the analysis results in tables and (adjustable) charts, that can be exported to MS-Windows ? text processing and presentation software.

::DEVELOPER

Kyazma B.V.

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 MapQTL

:: MORE INFORMATION