PASTA 1.8.6 – Practical Alignment using SATé and TrAnsitivity

PASTA 1.8.6

:: DESCRIPTION

PASTA (Practical Alignment using SATé and TrAnsitivity) is an improvement to SATé: it uses some of the algorithmic design of SATé but is faster, produces more accurate alignments and trees, and can scale to much larger datasets.

::DEVELOPER

The Warnow Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux /Windows/MacOsX
Python

:: DOWNLOAD

PASTA

:: MORE INFORMATION

Citation:

Research in Computational Molecular Biology Lecture Notes in Computer Science Volume 8394, 2014, pp 177-191
PASTA: Ultra-Large Multiple Sequence Alignment
Siavash Mirarab, Nam Nguyen, Tandy Warnow

Murlet 0.0.1 – Practical Alignment tool for structural RNA Sequences

Murlet 0.0.1

:: DESCRIPTION

Murlet is a practical alignment tool for structural RNA sequences. It is based on the Sankoff algorithm and uses an efficient scoring system that considerably reduces the time and space requirements without degrading alignment quality.

::DEVELOPER

Asai’s Lab. Computational Biology Research Center (CBRC),

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

Murlet

:: MORE INFORMATION

Citation:

Bioinformatics. 2007 Jul 1;23(13):1588-98. Epub 2007 Apr 25.
Murlet: a practical multiple alignment tool for structural RNA sequences.
Kiryu H, Tabei Y, Kin T, Asai K.