Tag: PASTA

PASTA 2.0 – Protein Aggregation Prediction

PASTA 2.0

:: DESCRIPTION

PASTA (Prediction of amyloid structure aggregation) is a web server for the analysis of amino acid sequences. It predicts which portions of a given input sequence are more likely to stabilize the cross-beta core of fibrillar aggregates.

::DEVELOPER

The BioComputing UP lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 PASTA

:: MORE INFORMATION

Citation:

PASTA 2.0: an improved server for protein aggregation prediction.
Walsh I, Seno F, Tosatto SC, Trovato A.
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W301-7. doi: 10.1093/nar/gku399.

Antonio Trovato, Flavio Seno and Silvio C.E. Tosatto.
The PASTA server for protein aggregation prediction
Protein Engineering Design & Selection, 20(10):521-523. (2007)

PASTA 1.8.6 – Practical Alignment using SATé and TrAnsitivity

PASTA 1.8.6

:: DESCRIPTION

PASTA (Practical Alignment using SATé and TrAnsitivity) is an improvement to SATé: it uses some of the algorithmic design of SATé but is faster, produces more accurate alignments and trees, and can scale to much larger datasets.

::DEVELOPER

The Warnow Lab 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /Windows/MacOsX
  • Python

:: DOWNLOAD

 PASTA

:: MORE INFORMATION

Citation:

Research in Computational Molecular Biology Lecture Notes in Computer Science Volume 8394, 2014, pp 177-191
PASTA: Ultra-Large Multiple Sequence Alignment
Siavash Mirarab, Nam Nguyen, Tandy Warnow