:: DESCRIPTION
PASTIS is a free Python implementation of methods to infer the 3D structure of a genome from Hi-C data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
N. Varoquaux, F. Ay, W. S. Noble and J.-P. Vert,
A statistical approach for inferring the three-dimensional structure of the genome
Technical report HAL-00937182, January 2014.
:: DESCRIPTION
The PLNseq package conducts differential expression (DE) analysis using high throughput RNA-seq read count data generated from correlated samples.
::DEVELOPER
Hong Zhang @Fudan University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Stat Med. 2015 Apr 30;34(9):1577-89. doi: 10.1002/sim.6449. Epub 2015 Jan 30.
PLNseq: a multivariate Poisson lognormal distribution for high-throughput matched RNA-sequencing read count data.
Zhang H1, Xu J, Jiang N, Hu X, Luo Z.
:: DESCRIPTION
PoissonSeq is an R package for the significance analysis of sequencing data based on a Poisson log linear model. This package implements a method for normalization, testing, and false discovery rate estimation for RNA-sequencing data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Jun Li, Daniela M Witten, Iain Johnstone, and Robert Tibshirani (2011)
Normalization, testing, and false discovery rate estimation for rna-sequencing data.
Biostatistics. 2012 Jul;13(3):523-38. Epub 2011 Oct 14.
:: DESCRIPTION
GPASS (Genome-wide Poisson Approximation for Statistical Significance) detects SNP disease associations in case control studies, controls FWER and FDR adjusting for dependence/linkage disequilibrium.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
