Tag: DNA Structure

PASTIS 0.3.3 – Poisson-based Algorithm for STable Inference of DNA Structure

PASTIS 0.3.3

:: DESCRIPTION

PASTIS is a free Python implementation of methods to infer the 3D structure of a genome from Hi-C data.

::DEVELOPER

Nelle Varoquaux

:: SCREENSHOTS

 N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • MATLAB

:: DOWNLOAD

 PASTIS

 :: MORE INFORMATION

Citation

N. Varoquaux, F. Ay, W. S. Noble and J.-P. Vert,
A statistical approach for inferring the three-dimensional structure of the genome
Technical report HAL-00937182, January 2014.

3D-DART – DNA Structure Modelling Server

3D-DART

:: DESCRIPTION

The 3D-DART server (3DNA-Driven DNA Analysis and Rebuilding Tool) provides a convenient means of generating custom 3D structural models of DNA with control over the local and global conformation.

::DEVELOPER

BONVIN LAB

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

M. van Dijk and A.M.J.J. Bonvin (2009)
“3D-DART: a DNA structure modelling server”
Nucl. Acids Res., 37 (Web Server Issue):W235-W239 doi:10.1093/nar/gkp287