PileLine 1.2 / PileLineGUI 1.3
:: DESCRIPTION
PileLine is a flexible command-line toolkit for efficient handling, filtering, and comparison of genomic position (GP) files produced by next-generation sequencing experiments (i.e. pileup, BED,GFF, or VCF files). PileLine is designed to be memory efficient by performing on-disk operations over sorted GP files directly.
PileLine GUI is a front-end of the PileLine toolkit, plus a genome browser.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
- Linux / Windows / MacOsX
- Java
- Apache Ant
:: DOWNLOAD
:: MORE INFORMATION
Citation
PileLine: a toolbox to handle genome position information in next-generation sequencing studies.
Glez-Peña D, Gómez-López G, Reboiro-Jato M, Fdez-Riverola F, Pisano DG.
BMC Bioinformatics. 2011 Jan 24;12:31.
PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies.
López-Fernández H, Glez-Peña D, Reboiro-Jato M, Gómez-López G, Pisano DG, Fdez-Riverola F.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W562-6. Epub 2011 Jun 6.