PileLine 1.2 / PileLineGUI 1.3

:: DESCRIPTION

PileLine is a flexible command-line toolkit for efficient handling, filtering, and comparison of genomic position (GP) files produced by next-generation sequencing experiments (i.e. pileup, BED,GFF, or VCF files). PileLine is designed to be memory efficient by performing on-disk operations over sorted GP files directly.

PileLine GUI is a front-end of the PileLine toolkit, plus a genome browser.

::DEVELOPER

SING Group.

:: SCREENSHOTS

:: REQUIREMENTS

• Linux / Windows / MacOsX
• Java
• Apache Ant

:: DOWNLOAD

 PileLine / PileLineGUI

:: MORE INFORMATION

Citation

PileLine: a toolbox to handle genome position information in next-generation sequencing studies.
Glez-Peña D, Gómez-López G, Reboiro-Jato M, Fdez-Riverola F, Pisano DG.
BMC Bioinformatics. 2011 Jan 24;12:31.

PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies.
López-Fernández H, Glez-Peña D, Reboiro-Jato M, Gómez-López G, Pisano DG, Fdez-Riverola F.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W562-6. Epub 2011 Jun 6.