Tag: Phylogenetic Classification

PhyloAssigner 6.166 – Phylogenetic Classification of Amplicon Pyrosequences

PhyloAssigner 6.166

:: DESCRIPTION

PhyloAssigner is a Perl pipeline for phylogenetic classification of amplicon pyrosequences.

::DEVELOPER

Bioinformatics at AWI

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

PhyloAssigner

:: MORE INFORMATION

Citation

ISME J. 2013 Jul;7(7):1322-32. doi: 10.1038/ismej.2013.32.
High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences.
Vergin KL1, Beszteri B, Monier A, Thrash JC, Temperton B, Treusch AH, Kilpert F, Worden AZ, Giovannoni SJ.

COGs 201204 – Phylogenetic Classification of Proteins encoded in complete Genomes

COGs 201204

:: DESCRIPTION

COGs (Collections of Clusters of Orthologous Genes) provide indispensable tools for comparative genomic analysis, evolutionary reconstruction and functional annotation of new genomes.

::DEVELOPER

National Center for Biotechnology Information

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Linux
  • C Compiler

:: DOWNLOAD

 COGs

:: MORE INFORMATION

Citation

Biol Direct. 2012 Dec 14;7:46. doi: 10.1186/1745-6150-7-46.
Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer.
Wolf YI, Makarova KS, Yutin N, Koonin EV.