Tag: PartiGene

PartiGene 3.0.6 – Generate Partial Genomes Tool

PartiGene 3.0.6

:: DESCRIPTION

PartiGene is a menu-driven, multi-step software tool which takes sequences (usually ESTs) and creates a dataabase of a non-redundant set of sequence objects (putative genes) which we term a partial genome.

PartiGene for OSX

::DEVELOPER

The Blaxter Lab at The Institute of Evolutionary Biology University of Edinburgh

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

PartiGene , for OSX

:: MORE INFORMATION

Citation:

J Parkinson, A Anthony, J Wasmuth, R Schmid, A Hedley, M Blaxter:
PartiGene—constructing partial genomes,
Bioinformatics 2004 20(9):1398-404).

wwwPartiGene 0.1 – Building a Web Interface to Partigene Databases

wwwPartiGene 0.1

:: DESCRIPTION

WebPartiGene is a tool that generates HTML, php and CGI scripts that together form a web based interface to PartiGene relational databases. WebPartiGene allows specific clusters to be retrieved from the PartiGene database by entering either a cluster identifier or an EST idenitifier. The BLAST annotation text can also be searched and limited by BLAST score. Selected clusters are displayed in graphical format, showing the alignment of constituent sequences. The display includes links to full BLAST reports, phrap assembly quality files and public depository database files. WebPartiGene is full compatible with mulit-species PartiGene databases.

::DEVELOPER

The Blaxter Lab at The Institute of Evolutionary Biology University of Edinburgh

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Web server

:: DOWNLOAD

wwwPartiGene

:: MORE INFORMATION

N/A