ICQ-lincRNA – Identification, Characterization, and Quantification of Long Intergenic Non-Coding RNAs

ICQ-lincRNA

:: DESCRIPTION

ICQ-lincRNA offers an end-to-end solution to identify and annotate expressed lincRNAs in next generation RNA sequencing data

::DEVELOPER

Bioinformatics Program, Division of Biomedical Statistics and Informatics, Mayo Clinic Research

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / VirtualBox

:: DOWNLOAD

ICQ-lincRNA

:: MORE INFORMATION

Citation

Hu G, Gupta SK, Troska TP, Nair A, Gupta M.
Long non-coding RNA profile in mantle cell lymphoma identifies a functional lncRNA ROR1-AS1 associated with EZH2/PRC2 complex.
Oncotarget. 2017 May 17;8(46):80223-80234. doi: 10.18632/oncotarget.17956. PMID: 29113297; PMCID: PMC5655192.

RNAcon 1.0 – Classification of non-coding RNAs (ncRNA)

RNAcon 1.0

:: DESCRIPTION

RNAcon is a web-server for the prediction and classification of non-coding RNAs. It uses SVM-based model for the discrimination between coding and ncRNAs and RandomForest-based prediction model for the classification of ncRNAs into different classes. The structural information based graph properties were used for the development of prediction model.

::DEVELOPER

RNAcon team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

RNAcon

:: MORE INFORMATION

Citation

Panwar, B; Arora, A. and Raghava GP (2014)
Prediction and classification of ncRNAs using structural information
BMC Genomics 2014, 15:127

StrAl 0.54 – Multiple alignments of non-coding RNAs

StrAl 0.54

:: DESCRIPTION

StrAl is an alignment tool designed to provide multiple alignments of non-coding RNAs following a fast progressive strategy.

::DEVELOPER

Institut für Physikalische Biologie

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

StrAl

:: MORE INFORMATION

Citation

Dalli, D., Wilm, A., Mainz, I., Steger, G. (2006).
StrAl: Progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time.
Bioinformatics (2006) 22 (13): 1593-1599.