:: DESCRIPTION
RNAenn computes the partition function and minimum free energy secondary structure for RNA with respect to an extended nearest neighbor energy model.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Energy parameters and novel algorithms for an extended nearest neighbor energy model of RNA.
Dotu I, Mechery V, Clote P.
PLoS One. 2014 Feb 21;9(2):e85412. doi: 10.1371/journal.pone.0085412.
:: DESCRIPTION
NIAS is a server to help the analysis of the conformational preferences of amino acid residues in proteins.
::DEVELOPER
SBCB – Structural Bioinformatics and Computational Biology Lab
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation:
Borguesan, B.; Inostroza-Ponta, M.; Dorn, M.
NIAS-Server: Neighbors Influence of Amino acids and Secondary Structures in Proteins.
Journal of Computational Biology. March 2017, 24(3): 255-265.
:: DESCRIPTION
PNNS allows the user to quickly find nodes closest to a queried vertex in any protein network available from BioGRID or specified by the user.
::DEVELOPER
Computational Biology Laboratory – Boston University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Syst Biol. 2009 Nov 29;3:112. doi: 10.1186/1752-0509-3-112.
Spectral affinity in protein networks.
Voevodski K, Teng SH, Xia Y.