MismatchHetMutRate – Perform Mismatch Analyses allowing for Heterogeneity of Mutation Rates

MismatchHetMutRate

:: DESCRIPTION

MismatchHetMutRate is a series of programs to perform mismatch analyses allowing for heterogeneity of mutation rates.

::DEVELOPER

Computational and Molecular Population Genetics Lab, University of Bern

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows

:: DOWNLOAD

MismatchHetMutRate

:: MORE INFORMATION

Citation

Schneider, S. and L. Excoffier (1999)
Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites. Application to human mitochondrial DNA.
Genetics 152: 1079-1089.

Syn-SCAN 0.9 – Synonymous Nonsynonymous Mutation Rates between Sequences Containing Ambiguous Nucleotides

Syn-SCAN 0.9

:: DESCRIPTION

Syn-SCAN calculates the synonymous and nonsynonmous mutation rates between sequences containing ambiguous nucleotides

::DEVELOPER

Stanford HIVDB Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows
Perl

:: DOWNLOAD

:: MORE INFORMATION

Citation

Synonymous-non-synonymous mutation rates between sequences containing ambiguous nucleotides (Syn-SCAN).
Gonzales MJ, Dugan JM, Shafer RW.
Bioinformatics. 2002 Jun;18(6):886-7.