:: DESCRIPTION
mvama is an R package designed for the analysis of microarray data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2011 Feb 1;12:42. doi: 10.1186/1471-2105-12-42.
Multivariate analysis of microarray data: differential expression and differential connection.
Kiiveri HT.
:: DESCRIPTION
rMATS is a computational tool to detect differential alternative splicing events from RNA-Seq data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Shen S., Park JW., Lu ZX., Lin L., Henry MD., Wu YN., Zhou Q., Xing Y.
rMATS: Robust and Flexible Detection of Differential Alternative Splicing from Replicate RNA-Seq Data.
PNAS, 111(51):E5593-601. doi: 10.1073/pnas.1419161111
Shen S., Park JW., Huang J., Dittmar KA., Lu ZX., Zhou Q., Carstens RP., Xing Y.
MATS: A Bayesian Framework for Flexible Detection of Differential Alternative Splicing from RNA-Seq Data.
Nucleic Acids Research, 2012;40(8):e61 doi: 10.1093/nar/gkr1291
:: DESCRIPTION
MUMAL is a new method, termed for PSM assessment that is based on machine learning techniques. The method can establish nonlinear decision boundaries, leading to a higher chance to retrieve more true positives.
:: DEVELOPER
Fabio R. Cerqueira (fabio.cerqueira@ufv.br); Ricardo S. Ferreira; Alcione P. Oliveira; Humberto J. O. Ramo; Christian Baumgartner.
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Genomics. 2012;13 Suppl 5:S4. doi: 10.1186/1471-2164-13-S5-S4. Epub 2012 Oct 19.
MUMAL: multivariate analysis in shotgun proteomics using machine learning techniques.
Cerqueira FR, Ferreira RS, Oliveira AP, Gomes AP, Ramos HJ, Graber A, Baumgartner C.
:: DESCRIPTION
MAPP (Multivariate Analysis of Protein Polymorphism) considers the physicochemical variation present in a column of a protein sequence alignment and, on the basis of this variation, predicts the impact of all possible amino acid substitutions on the function of the protein.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Stone EA, Sidow A.
Physicochemical constraint violation by missense substitutions mediates impairment of protein function and disease severity
Genome Res. 2005 Jul;15(7):978-86.
