3DCOMB 1.06 – Multiple Protein Structure Alignment

3DCOMB 1.06

:: DESCRIPTION

3DCOMB is a software which can generate a multiple structure alignment (MSA) with not only as many conserved cores as possible, but also high-quality pairwise alignments.

::DEVELOPER

Xu group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

3DCOMB

:: MORE INFORMATION

Citation:

Bioinformatics. 2011 Sep 15;27(18):2537-45. doi: 10.1093/bioinformatics/btr432.
Alignment of distantly related protein structures: algorithm, bound and implications to homology modeling.
Wang S, Peng J, Xu J.

Matt 1.0 – Multiple Protein Structure Alignment program

Matt 1.0

:: DESCRIPTION

Matt (Multiple Alignment with Translations and Twists), an aligned fragment pair chaining algorithm that, in intermediate steps, allows local flexibility between fragments: small translations and rotations are temporarily allowed to bring sets of aligned fragments closer, even if they are physically impossible under rigid body transformations.

::DEVELOPER

Berger Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/MacOsx/WIndows

:: DOWNLOAD

Matt

:: MORE INFORMATION

Citation:

M. Menke, B. Berger, L. Cowen,
“Matt: Local Flexibility Aids Protein Multiple Structure Alignment“,
PLOS Computational Biology, Vol. 4, No 1., 2008.