:: DESCRIPTION
Mattbench is a protein structural alignment benchmark that may be used to test and refine protein sequence aligners.
::DEVELOPER
Bioinformatics and Computational Biology Research Group, Tufts University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
IEEE/ACM Trans Comput Biol Bioinform. 2012 Jan-Feb;9(1):286-93. doi: 10.1109/TCBB.2011.70.
Touring protein space with Matt.
Daniels NM, Kumar A, Cowen LJ, Menke M.
:: DESCRIPTION
Matt (Multiple Alignment with Translations and Twists), an aligned fragment pair chaining algorithm that, in intermediate steps, allows local flexibility between fragments: small translations and rotations are temporarily allowed to bring sets of aligned fragments closer, even if they are physically impossible under rigid body transformations.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
M. Menke, B. Berger, L. Cowen,
“Matt: Local Flexibility Aids Protein Multiple Structure Alignment“,
PLOS Computational Biology, Vol. 4, No 1., 2008.
