Tag: Multiple Network

NetCoffee – Alignment approach to Identify Functionally Conserved Proteins in Multiple Networks

NetCoffee

:: DESCRIPTION

NetCoffee is a fast and accurate algorithm which allows to find a global alignment of multiple protein-protein interaction networks.

::DEVELOPER

Jialu Hu ( jialu.hu@fu-berlin.de)

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Linux
:: DOWNLOAD

 NetCoffee

:: MORE INFORMATION

Citation:

Bioinformatics. 2014 Feb 15;30(4):540-8. doi: 10.1093/bioinformatics/btt715. Epub 2013 Dec 13.
NetCoffee: a fast and accurate global alignment approach to identify functionally conserved proteins in multiple networks.
Hu J1, Kehr B, Reinert K.

tYNA – Tool for Managing, Comparing and Mining Multiple Networks

tYNA

:: DESCRIPTION

tYNA (TopNet-like Yale Network Analyzer), a Web system for managing, comparing and mining multiple networks, both directed and undirected. tYNA efficiently implements methods that have proven useful in network analysis, including identifying defective cliques, finding small network motifs (such as feed-forward loops), calculating global statistics (such as the clustering coefficient and eccentricity), and identifying hubs and bottlenecks etc.

::DEVELOPER

Gerstein Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 tYNA

:: MORE INFORMATION

Citation:

The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks.
Yip KY, Yu H, Kim PM, Schultz M, Gerstein M.
Bioinformatics. 2006 Dec 1;22(23):2968-70.