:: DESCRIPTION
MMCIF Dictionary Suite is a collection of tools to parse, validate, manage data dictionaries used by the PDB. Applications are also included, which convert data dictionaries to XML schema, provide HTML browsing, produce mapping information for relational database loaders (Db Loader) and convert data files between related CIF dialects
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:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
AmplifX is a software to search through a collection of primers, such as any molecular biologist has in his refrigerators, to find those which can be use to amplify a fragment into a target sequence, for example, and particularly, to design strategies to screen recombinant clones by PCR. Some information is associated with each primer; some automaticelly computed by AmplifX (like TM, Quality, length) and others given by the user (name, comments,…) This allows general aspects of primer management (sequences and real tubes). AmplifX can also design new primers.
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:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
The cb2Bib is a free, open source, and multiplatform application for rapidly extracting unformatted, or unstandardized bibliographic references from email alerts, journal Web pages, and PDF files.
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:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
QUOSA is a specialist in the management of scientific and technical documents.QUOSA products provide a complete end-to-end solution for literature search and document management in the life science fields. QUOSA products can be implemented in stages and are scalable and modular.
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:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
DECIPHER (Database Enabled Code for Ideal Probe Hybridization Employing R) is a software toolset that can be used for deciphering and managing DNA sequences efficiently using the R statistical programming language. The program is designed to be used with non-destructive workflows that guide the user through the process of importing, maintaining, analyzing, manipulating, and exporting a massive amount of DNA sequences.
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N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
DesignSignatures: a tool for designing primers that yield amplicons with distinct signatures.
Wright ES, Vetsigian KH.
Bioinformatics. 2016 Jan 23. pii: btw047
ES Wright et al. (2011)
“DECIPHER: A Search-Based Approach to Chimera Identification for 16S rRNA Sequences.”
Applied and Environmental Microbiology,
:: DESCRIPTION
Djeen (Database for Joomla!’s Extensible Engine) is a Joomla! component to manage an external database and file storing for experimental data. It is a user-friendly application, designed to streamline data storage and annotation collaboratively. Its database model, kept simple, is compliant with most technologies and allows storing and managing of heterogeneous data with the same system. Advanced permissions are managed through different roles.
::DEVELOPER
The CRCM’s Integrative Bioinformatics
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N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Res Notes. 2013 Jun 6;6:223. doi: 10.1186/1756-0500-6-223.
Djeen (Database for Joomla!’s Extensible Engine): a research information management system for flexible multi-technology project administration.
Stahl O, Duvergey H, Guille A, Blondin F, Vecchio AD, Finetti P, Granjeaud S, Vigy O, Bidaut G.
:: DESCRIPTION
QPCR is a versatile web-based Java application that allows to store, manage, and analyze data from quantitative real-time polymerase chain reaction (qPCR) experiments. It comprises a parser to automatically import generated data from qPCR devices and includes a variety of analysis methods to calculate Ct and amplification efficiency values. The analysis pipeline includes technical and biological replicate handling, incorporates sample or gene specific efficiency, normalization using single or multiple housekeeping genes, inter-run calibration, and fold change calculation. Moreover, the application supports proper error propagation throughout all analysis steps and allows conducting statistical tests on sample classes. Results can be visualized in highly customizable charts and exported for further investigation.
::DEVELOPER
Genomics & Bioinformatics Graz, Graz University of Technology
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:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Pabinger S, Thallinger GG, Snajder R, Eichhorn H, Rader R, Trajanoski Z.
QPCR: Application for real-time PCR data management and analysis.
BMC Bioinformatics 2009, 10:268
:: DESCRIPTION
tYNA (TopNet-like Yale Network Analyzer), a Web system for managing, comparing and mining multiple networks, both directed and undirected. tYNA efficiently implements methods that have proven useful in network analysis, including identifying defective cliques, finding small network motifs (such as feed-forward loops), calculating global statistics (such as the clustering coefficient and eccentricity), and identifying hubs and bottlenecks etc.
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:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks.
Yip KY, Yu H, Kim PM, Schultz M, Gerstein M.
Bioinformatics. 2006 Dec 1;22(23):2968-70.
:: DESCRIPTION
qPCR-DAMS is a database management system implemented on MS Access 2003 and Visual Basic. It is designed to analyze, manage, and store relative and absolute quantitative real-time PCR data. The system consists of 5 blocks: three blocks (Gene, Plate, and Experiment) for inputting, storing and describing raw data, and two blocks (View data and Process Data) for checking, evaluating, and processing data. Users are allowed to choose among four basic outputs: (I) Ratio relative quantification, (II) Absolute level, (III) Normalized absolute expression, and (IV) Ratio absolute quantification, and two advanced options: (V) Multiple reference relative quantification and (VI) Multiple references absolute quantification, within single software package. The coefficient of variation is monitored at each step during data processing and the accuracy is further improved by an easy data tracking and display system. In summary, qPCR-DAMS is a handy novel tool for real-time PCR users.
::DEVELOPER
Nili Jin , Keyu He and Lin Liu
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N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Nili Jin , Keyu He and Lin Liu
qPCR-DAMS: a database tool to analyze, manage, and store both relative and absolute quantitative real-time PCR data
Physiological Genomics 25:525-527 (2006)
:: DESCRIPTION
YCDMA (Y Chromosome Data Management) is designated to manage microsatellite data (mono- and bi-allelic).In order to reflect the hierarchical organization of an experiment, samples may be arranged into user-defined populations and populations into groups.Data defined in an experiment may be exported in one of the following formats (allowing their use in the corresponding softwares) :
ARLEQUIN
DISPAN
GENEPOP
MICROSAT
MIGRATE
NJBAFD
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:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
If you download and use this software please register to be informed for new release and modifications.
