Molekel 5.4.0 – 3D Molecular Visualization Program

BIOVIA Discovery Studio Visualizer allows you to view and edit molecular structures, sequences and sequence alignments and Perl scripts created with the Discovery Studio and other applications. It provides a convenient interface for everyday data analysis tasks and enables you to share and view data with other collaborators.

::DEVELOPER

3DEXPERIENCE

:: SCREENSHOTS

:: REQUIREMENTS

Windows / Linux
Microsoft PowerPoint / IE

:: DOWNLOAD

BIOVIA Discovery Studio Visualizer

:: MORE INFORMATION

3Dmol.js 1.6.4 – Molecular Visualization with WebGL

3Dmol.js 1.6.4

:: DESCRIPTION

3Dmol.js is an object-oriented, webGL based JavaScript library for online molecular visualization – No Java required! With 3Dmol.js, you can add beautifully rendered molecular visualizations to your web applications.

::DEVELOPER

David Ryan Koes, PhD

:: SCREENSHOTS

:: REQUIREMENTS

Web Browser
JavaScript

:: DOWNLOAD

3Dmol.js

:: MORE INFORMATION

Citation

3Dmol.js: Molecular Visualization with WebGL.
Rego N, Koes D.
Bioinformatics. 2014 Dec 12. pii: btu829.

NGL Viewer 0.9.3 – Web Application for Molecular Visualization

NGL Viewer 0.9.3

:: DESCRIPTION

The NGL Viewer is a web application for the visualization of macromolecular structures. Large molecular complexes from common structural file-formats (e.g. PDB, mmCIF) are interactively displayed by fully adopting capabilities of modern web browsers, including WebGL. A graphical user interface allows easy access to a variety of molecular representations (e.g. ‘cartoon, spacefill, licorice’). Moreover, the viewer can be embedded in other web sites to provide custom visualizations.

::DEVELOPER

Alexander Rose <alexander.rose@weirdbyte.de> @ Institute of Medical Physics and Biophysics

:: SCREENSHOTS

:: REQUIREMENTS

Web browser

:: DOWNLOAD

NGL Viewer

:: MORE INFORMATION

Citation
Nucleic Acids Res. 2015 Apr 29. pii: gkv402.
NGL Viewer: a web application for molecular visualization.
Rose AS, Hildebrand PW

iMol 0.40 – Molecular Visualization Application for Mac OS X

iMol 0.40

:: DESCRIPTION

iMol is a free molecular visualization application for Mac OS X operating system. The program is an indispensable tool for chemists and molecular biologists. iMol supports several file formats. It can easily handle small and large molecules, loads multiple molecules, can move and rotate them independently, or displays a molecular dynamics trajectory.

::DEVELOPER

Piotr Rotkiewicz

:: SCREENSHOTS

:: REQUIREMENTS

Mac OSX

:: DOWNLOAD

iMol

:: MORE INFORMATION

If you are using iMol in your research, please cite:
Piotr Rotkiewicz, “iMol Molecular Visualization Program,” (2007) http://www.pirx.com/iMol

JyMOL 1.0 – Java-based Molecular Visualization

JyMOL 1.0

:: DESCRIPTION

JyMOL, a Java-based development component, enables developers to easily create molecular visualization programs, browser applets, and JavaWS applications, replacing the visualization expert otherwise needed to build a specialized visualization component. The JyMOL API was designed to obviate the learning curve for users familiar with the PyMOL API.

::DEVELOPER

Schrödinger, LLC

:: SCREENSHOTS

:: REQUIREMENTS

Windows / Linux / Mac OsX
Java

:: DOWNLOAD

JyMOL

:: MORE INFORMATION

Citation

The JyMOL Molecular Graphics System, Schrödinger, LLC.