SnipViz – A SNP Visualizer

SnipViz

:: DESCRIPTION

SnipViz is a client-side software tool designed to disseminate multiple versions of related gene and protein sequences on web sites.

::DEVELOPER

SnipViz team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • JavaScript

:: DOWNLOAD

 SnipViz

:: MORE INFORMATION

Citation

BMC Res Notes. 2014 Jul 23;7:468. doi: 10.1186/1756-0500-7-468.
SnipViz: a compact and lightweight web site widget for display and dissemination of multiple versions of gene and protein sequences.
Jaschob D, Davis TN, Riffle M

Easyfig 2.2.5 – Genome Comparison Visualizer

Easyfig 2.2.5

:: DESCRIPTION

Easyfig is a Python application for creating linear comparison figures of multiple genomic loci with an easy-to-use graphical user interface (GUI).

::DEVELOPER

Beatson Microbial Genomics Lab.

:: SCREENSHOTS

Easyfig

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Python

:: DOWNLOAD

 Easyfig

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Apr 1;27(7):1009-10. doi: 10.1093/bioinformatics/btr039. Epub 2011 Jan 28.
Easyfig: a genome comparison visualizer.
Sullivan MJ1, Petty NK, Beatson SA.

PINV – Web-based Protein Interaction Network Visualizer

PINV

:: DESCRIPTION

PINV is an open source, native web application that facilitates the visualization of protein interactions

::DEVELOPER

the University of Cape Town (UCT) Computational Biology (CBIO) Group 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 PINV

:: MORE INFORMATION

Citation

A web-based protein interaction network visualizer.
Salazar GA, Meintjes A, Mazandu GK, Rapanoël HA, Akinola RO, Mulder NJ.
BMC Bioinformatics. 2014 May 6;15:129. doi: 10.1186/1471-2105-15-129.

Avogadro2 1.90 – Molecule Editor & Visualizer

Avogadro2 1.90

:: DESCRIPTION

Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible high quality rendering and a powerful plugin architecture.

::DEVELOPER

Avogadro team

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / MacOsX /  Linux

:: DOWNLOAD

Avogadro

:: MORE INFORMATION

Citation

J Cheminform. 2012 Aug 13;4(1):17. doi: 10.1186/1758-2946-4-17.
Avogadro: an advanced semantic chemical editor, visualization, and analysis platform.
Hanwell MD, Curtis DE, Lonie DC, Vandermeersch T, Zurek E, Hutchison GR.

MolPOV 2.1.0 – PDB to POV File Converter & Visualizer

MolPOV 2.1.0

:: DESCRIPTION

MolPOV is a PDB to POV file (POV-Ray) converter and molecular visualization tool for MS Windows.The PDB files can be from the Brookhaven PDB itself or from any molecular modeling program that can store structures in the PDB format. A POV setup dialog can be used to edit many of the basic scene features and rendering options. In addition, the program allows launching of the POV program to view the rendering immediately.

::DEVELOPER

Professor David E. Richardson

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

MolPOV

:: MORE INFORMATION

BIOVIA Discovery Studio Visualizer 4.5 – Molecular Visualization

BIOVIA DS Visualizer 4.5

:: DESCRIPTION

BIOVIA Discovery Studio Visualizer allows you to view and edit molecular structures, sequences and sequence alignments and Perl scripts created with the Discovery Studio and other applications. It provides a convenient interface for everyday data analysis tasks and enables you to share and view data with other collaborators.

::DEVELOPER

3DEXPERIENCE

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux
  • Microsoft PowerPoint / IE

:: DOWNLOAD

BIOVIA Discovery Studio Visualizer

:: MORE INFORMATION

RDCvis 1.02 – Residual Dipolar Coupling Visualizer

RDCvis 1.02

:: DESCRIPTION

RDCvis (Residual Dipolar Coupling visualizer) is a system for generating visualizations of RDC data in their macromolecular structural context. RDCvis uses specifically formatted NMR data files and PDB structure files in order to calculate and draw RDC representations. It takes advantage of the flexibility of the Kinemage graphics language by outputting results directly to a kinemage file, or directly incorporating the RDC curves into a pre-existing kinemage.

::DEVELOPER

Richardson Lab

:: SCREENSHOTS

Command Line

:: REQUIREMENTS

  • Windows / Mac /  Linux

:: DOWNLOAD

RDCvis

:: MORE INFORMATION

RDCvis is free software available under the terms of its own BSD-style license.