VirVarSeq – a low frequency Virus Variant detection pipeline for Illumina data

VirVarSeq

:: DESCRIPTION

VirVarSeq is a toolset designed to call variants at codon level in viral populations from deep sequencing data.

::DEVELOPER

VirTools team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 VirVarSeq

:: MORE INFORMATION

Citation

VirVarSeq: a low frequency Virus Variant detection pipeline for Illumina Sequencing using adaptive base-calling accuracy filtering.
Verbist BM, Thys K, Reumers J, Wetzels Y, Van der Borght K, Talloen W, Aerssens J, Clement L, Thas O.
Bioinformatics. 2014 Aug 31. pii: btu587.

WEBnm@ 3.3 – Web-server for Normal Mode Analysis of proteins

WEBnm@ 3.3

:: DESCRIPTION

WEBnm@ is meant to provide users with simple and automated computation and analysis of low-frequency normal modes for proteins.

::DEVELOPER

Reuter Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2014 Dec 30;15(1):6597. [Epub ahead of print]
WEBnm@ v2.0: Web server and services for comparing protein flexibility.
Tiwari SP, Fuglebakk E, Hollup SM, Skjærven L, Cragnolini T, Grindhaug SH, Tekle KM, Reuter N.

WEBnm@: a web application for normal mode analysis of proteins.
S.M.Hollup, G.Salensminde and N.Reuter.
BMC Bioinformatics (2005), 6(1): 52