Tag: Laboratory Information Management System

CLIMS 2.1.4 – Laboratory Information Management System for protein Crystallography

CLIMS 2.1.3

:: DESCRIPTION

CLIMS is a Laboratory Information Management System for protein Crystallography that features a novel graphical interface to a relational database. CLIMS has been reviewed as one of the top two LIMS for crystallographers by CCP4.

::DEVELOPER

Whisstock Laboratory,  Monash University

:: SCREENSHOTS

CLIMS

:: REQUIREMENTS

  • Linux/MacOsX / WIndows
  • Java

:: DOWNLOAD

 CLIMS

:: MORE INFORMATION

Citation:

Fulton KF et al (2004)
CLIMS: Crystallography Laboratory Information Management System.
Acta Crystallogr D Biol Crystallogr. Sep;60(Pt 9):1691-3

Proteins. 2006 Jan 1;62(1):4-7.
Managing and mining protein crystallization data.
Amin AA, Faux NG, Fenalti G, Williams G, Bernadou A, Daglish B, Keefe K, Middleton S, Rae J, Tetis K, Law RH, Fulton KF, Rossjohn J, Whisstock JC, Buckle AM.

Onco-STS – Web-based Laboratory Information Management System

Onco-STS

:: DESCRIPTION

Onco-STS (oncogenomic studies) is a web-based Laboratory Information Management System for sample and analysis tracking in oncogenomic experiments.

::DEVELOPER

Onco-STS team

:: SCREENSHOTS

Onco-STS

:: REQUIREMENTS

  • Windows / Linux / MacOS
  • Grails
  • JRE

:: DOWNLOAD

 Onco-STS

:: MORE INFORMATION

Citation:

Onco-STS: a web-based laboratory information management system for sample and analysis tracking in oncogenomic experiments.
Gavrielides M, Furney SJ, Yates T, Miller CJ, Marais R.
Source Code Biol Med. 2014 Dec 5;9(1):0. doi: 10.1186/s13029-014-0025-z.

MendeLIMS 3.2 – Laboratory Information Management System for Clinical Genome Sequencing

MendeLIMS 3.2

:: DESCRIPTION

MendeLIMS is a laboratory information management system (LIMS) that is adaptable to continuously evolving experimental protocols and sequencing technologies. Large clinical genomics studies require the ability to select from a large population of patients/samples to identify the samples of interest. Samples must be accurately tracked through various transformations in order to be certain that DNA sequencing results are attributable to the correct originating sample. This web-based LIMS has a flexible configuration, is easily implemented with open source tools and can be tooled for large scale management of next generation DNA

::DEVELOPER

Ji Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • MacOsX / Linux
  • Web Server
  • rails 2.3.x and ruby 1.8.7
  • MySQL

:: DOWNLOAD

 MendeLIMS

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2014 Aug 27;15:290. doi: 10.1186/1471-2105-15-290.
MendeLIMS: a web-based laboratory information management system for clinical genome sequencing.
Grimes SM, Ji HP