Dalliance 0.13 – Interactive Genome Viewing on the web

Dalliance 0.13

:: DESCRIPTION

Dalliance is an interactive genome viewer which runs directly in your web browser. All data is fetched using the established distributed annotation system (DAS) protocol, making it easy to customize the browser and add extra data.

::DEVELOPER

Dalliance Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Down TA, Piipari M, Hubbard TJ.,
Dalliance: interactive genome viewing on the web.
Bioinformatics 2011 Jan 19.

MyWEST – My Web Extraction Software Tool

MyWEST

:: DESCRIPTION

MyWEST is a software package for effective mining of web interfaced biomolecular databanks. It provides an intuitive visual interface for building templates that define which information should be extracted from HTML pages of web databanks, then uses the created templates to mine information from multiple web pages of different databanks, stores and aggregates in a common database the extracted data, and allows performing articulated queries on the aggregated data for identification of hidden significant biological information.

::DEVELOPER

Masseroli Marco, Ph.D

:: SCREENSHOTS

MyWEST

:: REQUIREMENTS

  • Windows
  • MS-Access
  • MySQL
  • Excel
  • Java

:: DOWNLOAD

 MyWEST

:: MORE INFORMATION

Citation

Masseroli M, Stella A, Meani N, Alcalay M, Pinciroli F.
MyWEST: My Web Extraction Software Tool for effective mining of annotations from web-based databanks.
Bioinformatics 2004 Dec 12; 20(18): 3326-3335.

Onco-STS – Web-based Laboratory Information Management System

Onco-STS

:: DESCRIPTION

Onco-STS (oncogenomic studies) is a web-based Laboratory Information Management System for sample and analysis tracking in oncogenomic experiments.

::DEVELOPER

Onco-STS team

:: SCREENSHOTS

Onco-STS

:: REQUIREMENTS

  • Windows / Linux / MacOS
  • Grails
  • JRE

:: DOWNLOAD

 Onco-STS

:: MORE INFORMATION

Citation:

Onco-STS: a web-based laboratory information management system for sample and analysis tracking in oncogenomic experiments.
Gavrielides M, Furney SJ, Yates T, Miller CJ, Marais R.
Source Code Biol Med. 2014 Dec 5;9(1):0. doi: 10.1186/s13029-014-0025-z.

jHeatmap 1.1.0 – Create interactive Heatmaps on the Web

jHeatmap 1.1.0

:: DESCRIPTION

jHeatmap  is a java framework to create interactive heatmaps on the web.

::DEVELOPER

Biomedical Genomics Group

:: SCREENSHOTS

jHeatmap

:: REQUIREMENTS

  • Web Browser
  • Java

:: DOWNLOAD

 jHeatmap

:: MORE INFORMATION

Citation

Deu-Pons J, Schroeder MP, Lopez-Bigas N.
jHeatmap: an interactive heatmap viewer for the web.
Bioinformatics. 2014 Feb 23. doi: 10.1093/bioinformatics/btu094

WMD 3.2 – Web MicroRNA Designer

WMD 3.2

:: DESCRIPTION

WMD3 is a web app for the automated design of artificial microRNAs.

::DEVELOPER

Dept. Weigel

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Apache
  • Perl
  • gcc
  • MySQL
  • GenomeMapperBlast,
  • ViennaRNA

:: DOWNLOAD

 WMD

:: MORE INFORMATION

Citation

Plant Cell. 2006 May;18(5):1121-33. Epub 2006 Mar 10.
Highly specific gene silencing by artificial microRNAs in Arabidopsis.
Schwab R, Ossowski S, Riester M, Warthmann N, Weigel D.

SeWeR 3.0 – Sequence Analysis using Web Resources

SeWeR 3.0

:: DESCRIPTION

SeWeR (Sequence analysis using Web Resources) is an integrated, Dynamic HTML (DHTML) interface to commonly used bioinformatics services available on the World Wide Web. It is highly customizable, extendable, platform neutral, completely server-independent and can be hosted as a web page as well as being used as stand-alone software running within a web browser.

::DEVELOPER

Malay Kumar Basu , Centre for Cellular and Molecular Biology,  India

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • Java

:: DOWNLOAD

SeWeR

:: MORE INFORMATION

Citaiton

Basu M K (2001)
SeWeR: a customizable and integrated dynamic HTML interface to bioinformatics services.
Bioinformatics. 17(6): 577-578.