Tag: KGML

KEGGscape 0.9.1 – File Reader and Pathway Vsualizer for KEGG XML (KGML) files

KEGGscape 0.9.1

:: DESCRIPTION

KEGGscape is a pathway data integration and visualization app for Cytoscape.

::DEVELOPER

KEGGscape team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux/ MacOsX
  • Cytoscape

:: DOWNLOAD

KEGGscape

:: MORE INFORMATION

Citation

KEGGscape: a Cytoscape app for pathway data integration.
Nishida K, Ono K, Kanaya S, Takahashi K.
F1000Res. 2014 Jul 1;3:144. doi: 10.12688/f1000research.4524.1

KGML-ED 1.0 – Edit, Process, and Visualize KGML pathway files

KGML-ED 1.0

:: DESCRIPTION

KGML-ED supports the dynamic exploration and editing of KEGG Pathway diagrams. It is a graphical network editor, that provides read- and write-support for the KGML (KEGG Markup Language) file format. Pathway files are loaded and transformed into a graph network which may be modified to fulfill user-specific needs (e.g. it is possible, to delete or add network elements, change labels and colors). Novel network exploration approaches are supported by the system as well.

::DEVELOPER

KGML-ED team

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux/  MacOSX
  • Java

:: DOWNLOAD

 KGML-ED

:: MORE INFORMATION

Citation

Christian Klukas and Falk Schreiber
Dynamic exploration and editing of KEGG pathway diagrams.
Bioinformatics 2007 23: 344-350.