TEMT 1.0 – Transcripts Abundances Estimation from Heterogeneous Tissue sample of RNA-Seq data

TEMT 1.0

:: DESCRIPTION

TEMT (Transcript Estimation from Mixed Tissue samples) is a tool for transcripts abundances estimation from heterogeneous tissue sample of RNA-Seq data

::DEVELOPER

CBCL Lab (Computational Biology and Computational Learning) @ UCI

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/MacOsX
  • Python

:: DOWNLOAD

 TEMT

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2013;14 Suppl 5:S11. doi: 10.1186/1471-2105-14-S5-S11. Epub 2013 Apr 10.
A mixture model for expression deconvolution from RNA-seq in heterogeneous tissues.
Li Y1, Xie X.

DSection – Probabilistic Analysis of Gene Expression Measurements from Heterogeneous Tissues

DSection

:: DESCRIPTION

DSection is a model for reconstructing cell type specific gene expression profiles from measurements of heterogeneous tissues.

DSection Online Version

::DEVELOPER

Timo Erkkilä

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX / Windows
  • Matlab

:: DOWNLOAD

 DSection

:: MORE INFORMATION

Citation:

Probabilistic analysis of gene expression measurements from heterogeneous tissues.
Erkkilä T, Lehmusvaara S, Ruusuvuori P, Visakorpi T, Shmulevich I,Harri Lähdesmäki.
Bioinformatics. 2010 Oct 15;26(20):2571-7. Epub 2010 Jul 14.