:: DESCRIPTION
linkSNPs is a SNP detection tool with haplotype information from an individual sample.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Mol Biol Evol. 2013 Jun 28. [Epub ahead of print]
The Linkage Method: A Novel Approach for SNP Detection and Haplotype Reconstruction from a Single Diploid Individual Using Next-Generation Sequence Data.
Sasaki E, Sugino RP, Innan H.
:: DESCRIPTION
PHASE is a software for haplotype reconstruction, and recombination rate estimation from population data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
The software is free for non-commercial use, and may be licensed for commercial use.
:: DESCRIPTION
fastPHASE is a software for haplotype reconstruction, and estimating missing genotypes from population data. fastPHASE can handle larger data-sets than PHASE (e.g., hundreds of thousands of markers in thousands of individuals), but does not provide estimates of recombination rates.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
The software is free for non-commercial use, and may be licensed for commercial use.
Citation
Scheet, P and Stephens, M (2006) A Fast and Flexible Statistical Model for Large-Scale Population Genotype Data: Applications to Inferring Missing Genotypes and Haplotypic Phase. Am J Hum Genet 78: 629-644
