phyloBreak – Gene Genealogy Simulator for Phylogeographic Study

phyloBreak

:: DESCRIPTION

phyloBreak was designed to simulate gene genealogies and to analyze phylogeographic breaks in these gene genealogies

::DEVELOPER

Chih-Horng Kuo

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux/ MacOsX
  • C++ Compiler

:: DOWNLOAD

phyloBreak

:: MORE INFORMATION

Citation

Kuo CH, Avise JC. 2005.
Phylogeographic breaks in low-dispersal species: the emergence of concordance across gene trees.
Genetica, 124, 179-186. DOI: 10.1007/s10709-005-2095-y

genePed 2.0 – Gene Genealogy Simulator based on Organismal Pedigree

genePed 2.0

:: DESCRIPTION

genePed is designed to generate gene genealogies that are either independent of each other or all share one common organismal pedigree.

::DEVELOPER

Chih-Horng Kuo

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux/ MacOsX
  • C++ Compiler

:: DOWNLOAD

 genePed

:: MORE INFORMATION

Citation

Kuo CH, Avise JC. 2008.
Does organismal pedigree impact the magnitude of topological congruence among gene trees for unlinked loci?
Genetica, 132, 219-225.