Tag: Flow Cytometry

flowBin 1.28.0 – Combining Multitube Flow Cytometry data by Binning

flowBin 1.28.0

:: DESCRIPTION

flowBin is a parameterisation-free method for combining multitube flow cytometry data into a higher-dimensional form suitable for deep profiling and discovery.

::DEVELOPER

Kieran O’Neill <koneill at bccrc.ca>

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux /MacOs
  • R
  • Bioconductor

:: DOWNLOAD

 flowBin

:: MORE INFORMATION

Citation

Deep profiling of multitube flow cytometry data.
O’Neill K, Aghaeepour N, Parker J, Hogge D, Karsan A, Dalal B, Brinkman RR.
Bioinformatics. 2015 Jan 18. pii: btv008.

FlowAnd 1.0 – Analyze Largescale, Multi-color Flow Cytometry data

FlowAnd 1.0

:: DESCRIPTION

FlowAnd is designed to analyze and integrate largescale, multi-color flow cytometry data. It implements methods for data importing, various transformations, several clustering algorithms for automatic clustering, visualization tools as well as straightforward statistical testing.

::DEVELOPER

Hautaniemi Lab

:: SCREENSHOTS

FlowAnd

:: REQUIREMENTS

:: DOWNLOAD

 FlowAnd

:: MORE INFORMATION

Citation

Lahesmaa-Korpinen AM, Jalkanen SE, Chen P, Valo E, Nú?ez- Fontarnau J, et al. (2011)
FlowAnd: Comprehensive Computational Framework for Flow Cytometry Data Analysis
J Proteomics Bioinform 4: 245-249. doi:10.4172/ jpb.1000197

flowVS 1.24.0 – Variance Stabilization in Flow Cytometry

flowVS 1.24.0

:: DESCRIPTION

flowVS is a variance-stabilization algorithm that removes the mean-variance correlations from cell populations identified in each fluorescence channel.

::DEVELOPER

Ariful Azad

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R / BioConductor

:: DOWNLOAD

 flowVS

:: MORE INFORMATION

Citation

flowVS: channel-specific variance stabilization in flow cytometry.
Azad A, Rajwa B, Pothen A.
BMC Bioinformatics. 2016 Jul 28;17:291. doi: 10.1186/s12859-016-1083-9.

ModFit LT 5.0 – Flow Cytometry Modeling

ModFit LT 5.0

:: DESCRIPTION

ModFit LT follows the proud tradition of its predecessors – innovative features and unmatched flexibility to analyze even the most difficult DNA patterns. This is by far the most versatile DNA analysis software we have ever offered, featuring AutoDebris?, AutoAggregates?, AutoLinearity?, and exceptional batch processing. Powerful database support and an intuitive interface make this software a necessity in your laboratory. For fast, accurate analysis of DNA data files with report-ready screen layout, flexible databasing and user selectable analysis, look to ModFit LT™. This is the most comprehensive flow cytometric DNA Cell Cycle and Cell Proliferation analysis software available.

::DEVELOPER

Verity Software House

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Mac OsX

:: DOWNLOAD

ModFit LT

:: MORE INFORMATION

Citation

Effects of resolution reduction on data analysis.
Hunsberger B, Bagwell CB, Herbert D, Bray C, Langweiler M.
Cytometry A. 2003 Jun;53(2):103-11.

BayesFlow 0.1 – Latent Modeling of Flow Cytometry Cell Populations

BayesFlow 0.1

:: DESCRIPTION

BayesFlow is a Bayesian hierarchical model, that models the variation across indivuals for clow cytometry data.

::DEVELOPER

Jonas Wallin

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX
  • Python

:: DOWNLOAD

 BayesFlow

:: MORE INFORMATION

Citation

Erratum to: BayesFlow: latent modeling of flow cytometry cell populations.
Johnsson K, Wallin J, Fontes M.
BMC Bioinformatics. 2016 Mar 31;17(1):149.

Cyflogic 1.2.1 – Flow Cytometry Data Analysis Tool

Cyflogic 1.2.1

:: DESCRIPTION

Cyflogic is a flow cytometry data analysis tool for Microsoft Windows enviroment. It has all “regular” analysis capabilities, such as dot plot, histogram and statistics. In addition, Cyflogic offers new innovative tools for your data analysis.

::DEVELOPER

CyFlo Ltd.

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

Cyflogic

:: MORE INFORMATION

RefreshRatio 4.0 – Refresh Ratios in Flow Cytometry List-Files

RefreshRatio 4.0

:: DESCRIPTION

RefreshRatio is a software to refresh ratios in (BD) FCS (Flow Cytometry) list-files.

::DEVELOPER

AMC, CMO, Amsterdam, The Netherlands – Contact: R.A.Hoebe -at- amc.nl

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

RefreshRatio

:: MORE INFORMATION

This software is free to anyone, just for fun send author a postcard:
AMC, Cell biology & Histology CMO, Ron Hoebe, Room M3-106-1
Meibergdreef 15, 1105 AZ  Amsterdam, The Netherlands

 

ListMath 2.1 – Create Histograms & Plots from Flow Cytometry List-Files

ListMath 2.1

:: DESCRIPTION

ListMath create histograms, bivariate dot plots, density and contour plots from flow data list files, and it can create regions and gates to do math.

::DEVELOPER

AMC, CMO, Amsterdam, The Netherlands – Contact: R.A.Hoebe -at- amc.nl

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

ListMath

:: MORE INFORMATION

This software is free to anyone, just for fun send author a postcard:
AMC, Cell biology & Histology CMO, Ron Hoebe, Room M3-106-1
Meibergdreef 15, 1105 AZ  Amsterdam, The Netherlands

Flow Explorer 4.2 – Analysis for Flow Cytometry File

Flow Explorer 4.2

:: DESCRIPTION

Flow Explorer is a software to scan folders for flow cytometry List-Files and show parameters, notes, histograms, bivariate dot plots, density and contour plots.

::DEVELOPER

AMC, CMO, Amsterdam, The Netherlands – Contact: R.A.Hoebe -at- amc.nl

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

Flow Explorer

:: MORE INFORMATION

This software is free to anyone, just for fun send author a postcard:
AMC, Cell biology & Histology CMO, Ron Hoebe, Room M3-106-1
Meibergdreef 15, 1105 AZ  Amsterdam, The Netherlands