UnoSeq 1.0 – Expression Profiling with Next Generation Sequencing without a Reference Genome

UnoSeq 1.0

:: DESCRIPTION

UnoSeq is a Java library to analyze next generation sequencing data (e.g. data generated by Illumina’s mRNAseq method) and especially perform expression profiling in organisms where no well-annotated reference genome exists.

::DEVELOPER

UnoSeq team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows / Mac OsX.
Java
Bowtie
Velvet
BLAST

:: DOWNLOAD

UnoSeq

:: MORE INFORMATION

Citation

Into the unknown: expression profiling without genome sequence information in CHO by next generation sequencing.
Birzele F, Schaub J, Rust W, Clemens C, Baum P, Kaufmann H, Weith A, Schulz TW, Hildebrandt T.
Nucleic Acids Res. 2010 Jul;38(12):3999-4010. doi: 10.1093/nar/gkq116.

GeneHub-GEPIS – Expression Profiling for Normal and Cancer Tissues based on an integrated Gene Database

GeneHub-GEPIS

:: DESCRIPTION

GeneHub-GEPIS is a bioinformatics tool for inferring gene expression patterns in a large panel of normal and cancer tissues based on human and mouse EST sequence abundance. This tool is built upon the GeneHub database, which integrates gene and protein information from several databases

::DEVELOPER

UCSF CGL -Genentech Collaboration

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W152-8. Epub 2007 Jun 1.
GeneHub-GEPIS: digital expression profiling for normal and cancer tissues based on an integrated gene database.
Zhang Y, Luoh SM, Hon LS, Baertsch R, Wood WI, Zhang Z.