Tag: Gene Database

Annokey – Gene-based Search for Key-terms in NCBI Gene Database and Associated PubMed Abstracts

Annokey

:: DESCRIPTION

Annokey is a command line tool for annotating gene lists with the results of a key-term search of the NCBI Gene database and linked PubMed article abstracts. Its purpose is to help users prioritise genes by relevance to a domain of interest, such as “breast cancer” or “DNA repair” etcetera. The user steers the search by specifying a ranked list of keywords and terms that are likely to be highly correlated with their domain of interest.

::DEVELOPER

Bernie Pope

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX
  • Python

:: DOWNLOAD

 Annokey

:: MORE INFORMATION

GeneHub-GEPIS – Expression Profiling for Normal and Cancer Tissues based on an integrated Gene Database

GeneHub-GEPIS

:: DESCRIPTION

GeneHub-GEPIS is a bioinformatics tool for inferring gene expression patterns in a large panel of normal and cancer tissues based on human and mouse EST sequence abundance. This tool is built upon the GeneHub database, which integrates gene and protein information from several databases

::DEVELOPER

UCSF CGL -Genentech Collaboration

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W152-8. Epub 2007 Jun 1.
GeneHub-GEPIS: digital expression profiling for normal and cancer tissues based on an integrated gene database.
Zhang Y, Luoh SM, Hon LS, Baertsch R, Wood WI, Zhang Z.