Pepper 1.5.1 – Protein Complex Expansion using Protein-Protein intERaction networks

Pepper 1.5.1

:: DESCRIPTION

PEPPER is a plugin which finds meaningful pathways / complexes connecting a protein set members within a PPI-network using multi-objective optimization.

::DEVELOPER

Pepper team

:: SCREENSHOTS

:: REQUIREMENTS

Windows/Linux/MacOsX
Java
CytoScape

:: DOWNLOAD

Pepper

:: MORE INFORMATION

Citation

Pepper: Cytoscape app for Protein complex Expansion using Protein-Protein intERaction networks.
Winterhalter C, Nicolle R, Louis A, To C, Radvanyi F, Elati M.
Bioinformatics. 2014 Aug 18. pii: btu517

MEED – Model Expansion Experimental Design

MEED

:: DESCRIPTION

MEED is a tool for practical microarray experimental design that can suggest experiments so as to avoid ambiguity in the identification of regulatory relatrionships.

::DEVELOPER

Irit Gat-Viks laboratory.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

WIndows/Linux
R
C++

:: DOWNLOAD

MEED

:: MORE INFORMATION

Citation:

Szczurek E, Gat-Viks I, Tiuryn J, Vingron M:
Elucidating regulatory mechanisms downstream of a signaling pathway using informative experiments.
Mol Syst Biol 2009, 5:287.