Tag: Evolutionary Dynamics

EDEN – Evolutionary Dynamics within Environments

EDEN

:: DESCRIPTION

EDEN is the first software for the rapid detection of protein families and regions under positive selection, as well as their associated biological processes, from meta- and pangenome data. It provides an interactive result visualization for detailed comparative analyses.

::DEVELOPER

Algorithmic Bioinformatics, Heinrich-Heine-Universität Düsseldorf

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

EDEN

:: MORE INFORMATION

Citation

Münch PC, Stecher B, McHardy AC.
EDEN: evolutionary dynamics within environments.
Bioinformatics. 2017 Oct 15;33(20):3292-3295. doi: 10.1093/bioinformatics/btx394. PMID: 28637301; PMCID: PMC5860032.

SPREAD3 0.9.7 – Spatial Phylogenetic Reconstruction of Evolutionary Dynamics

SPREAD3 0.9.7

:: DESCRIPTION

SPREAD is a user-friendly application to analyze and visualize phylogeographic reconstructions resulting from Bayesian inference of spatio-temporal diffusion.

::DEVELOPER

SPREAD team

:: SCREENSHOTS

SPREAD

:: REQUIREMENTS

  • Linux/MacOsX/Windows
  • Java

:: DOWNLOAD

 SPREAD 

:: MORE INFORMATION

Citation

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes.
Bielejec F, Baele G, Vrancken B, Suchard MA, Rambaut A, Lemey P.
Mol Biol Evol. 2016 Aug;33(8):2167-9. doi: 10.1093/molbev/msw082.

Bioinformatics. 2011 Oct 15;27(20):2910-2. doi: 10.1093/bioinformatics/btr481.
SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics.
Bielejec F, Rambaut A, Suchard MA, Lemey P.