ComB 2.0.4-1 -Downstream Mapping Analysis for Next Generation Sequence Data

ComB 2.0.4-1

:: DESCRIPTION

ComB is a software package designed for the downstream analysis of short read mapping data produced by the ABI SOLiD and Illumina sequencing platforms. ComB operates on the mapping output produced by the mapping program PerM and is capable of providing SNP calls, resequencing output, and expression analysis.

::DEVELOPER

Ting Chen

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler

:: DOWNLOAD

 ComB

:: MORE INFORMATION

Citation:

J Comput Biol. 2011 Jun;18(6):795-807. doi: 10.1089/cmb.2011.0027. Epub 2011 May 12.
ComB: SNP calling and mapping analysis for color and nucleotide space platforms.
Souaiaia T, Frazier Z, Chen T.

CalMaTe 0.12.1 – Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation

CalMaTe 0.12.1

:: DESCRIPTION

CalMaTe is a multi-array post-processing method of allele-specific copy-number estimates (ASCNs).

::DEVELOPER

Henrik Bengtsson <henrikb at braju.com>

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/ MacOsX
  • R

:: DOWNLOAD

 CalMaTe

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Jul 1;28(13):1793-4. doi: 10.1093/bioinformatics/bts248. Epub 2012 May 9.
CalMaTe: a method and software to improve allele-specific copy number of SNP arrays for downstream segmentation.
Ortiz-Estevez M1, Aramburu A, Bengtsson H, Neuvial P, Rubio A.