Gepard 1.40 – Calculation of Dotplots even for Large Sequences

Gepard 1.40

:: DESCRIPTION

Gepard (German: “cheetah”, Backronym for “GEnome PAir – Rapid Dotter”) allows the calculation of dotplots even for large sequences like chromosomes or bacterial genomes.

::DEVELOPER

CUBE – Bioinformatics and Computational Systems Biology, University of Vienna

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java 

:: DOWNLOAD

  Gepard

:: MORE INFORMATION

Citation

Krumsiek J, Arnold R, Rattei T.
Gepard: A rapid and sensitive tool for creating dotplots on genome scale.
Bioinformatics 2007; 23(8): 1026-8. PMID: 17309896

dotplot 0.3 – Simple Shaded DotPlotter

dotplot 0.3

:: DESCRIPTION

Simple Shaded DotPlotter allows you to do dotplot analysis and highlight selected sequence regions on the dotplot. It also provides a simple numerical evalutation of the dotplot data that can then be used for statistics.

::DEVELOPER

Dr.  Philipp  Schlüter

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 Simple Shaded DotPlotter

:: MORE INFORMATION