PreDNA 1.0 – Accurate Prediction of DNA-binding sites in Proteins

PreDNA 1.0

:: DESCRIPTION

PreDNA is a program for predicting DNA-binding sites in proteins by integrating sequence information with geometric structure.

::DEVELOPER

The Li’s Group of Theoretical Biophysics and Bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

PreDNA

:: MORE INFORMATION

Citation

:: DESCRIPTION

DNABindProt is designed to predict DNA-binding residues, based on the fluctuations of residues in high-frequency modes by the Gaussian network model.

::DEVELOPER

Polymer Research Center

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

:: MORE INFORMATION

Citation:

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W417-23. doi: 10.1093/nar/gkq396. Epub 2010 May 16.
DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues.
Ozbek P, Soner S, Erman B, Haliloglu T.

:: DESCRIPTION

DBS-PSSM is a web server to provide predictions of DNA-binding sites for any new protein from its amino acid sequence.

::DEVELOPER

Shandar Ahmad

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2005 Feb 19;6:33.
PSSM-based prediction of DNA binding sites in proteins.
Ahmad S, Sarai A.