Tag: Direct

Mogrify – A Directory of defined Factors for direct Cell Reprogramming

Mogrify

:: DESCRIPTION

Mogrify uses a network-based algorithm designed to find transcription factors that impart the most influence on changes in cellular state. This website will allow you to explore possible reprogramming experiments, different collections of transcription factors as well as the look at the changes in the regulatory network.

::DEVELOPER

FANTOM

:: SCREENSHOTS

N/A

::  REQUIREMENTS

  • Web browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

Owen J L Rackham, et al.
A predictive computational framework for direct reprogramming between human cell types
Nat Genet. 2016 Mar;48(3):331-5. doi: 10.1038/ng.3487.

ReadOut – Calculation of Direct and Indirect Readout energy Z-scores for Protein-DNA complexes

ReadOut

:: DESCRIPTION

ReadOut is a server calculates:
(1) The DNA conformational energy and Z-score, and
(2) The direct readout or base-amino acid interaction energy and Z-score for protein-DNA complex structures.

::DEVELOPER

Shandar Ahmad

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Server

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition.
Ahmad S, Kono H, Araúzo-Bravo MJ, Sarai A.
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W124-7.