Tag: database Searching

MIDAS 1.1 – A Database-Searching Algorithm for Metabolite Identification in Metabolomics

MIDAS 1.1

:: DESCRIPTION

MIDAS (Metabolite Identification via Database Searching) is a database searching approach which can be used for metabolite identification in metabolomics by matching measured tandem mass spectra (MS/MS) against the predicted fragments of metabolites in a database.

::DEVELOPER

the Pan lab

:: SCREENSHOTS

N/a

:: REQUIREMENTS

  • Windows /  Mac OsX / Linux
  • Python

:: DOWNLOAD

 MIDAS

:: MORE INFORMATION

Citation

Anal Chem. 2014 Sep 11.
MIDAS: A Database-Searching Algorithm for Metabolite Identification in Metabolomics.
Wang Y1, Kora G, Bowen BP, Pan C.

Tag-DB 0.4.0 – de novo Sequencing and Tag-based database Searching of MS/MS Spectra

Tag-DB 0.4.0

:: DESCRIPTION

Tag-DB provides a user-friendly, lightweight and open-source graphical user interface for running the de novo sequencing algorithm PepNovo+ and also holds the possibiliy to search derived short amino acid sequences (so-called tags) against a protein database in order to retrieve peptide and protein identifications.

::DEVELOPER

Thilo Muth and Harald Barsnes.

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux
  • Java

:: DOWNLOAD

 Tag-DB 

:: MORE INFORMATION