Tag: Metabolite Identification

metabosearch – Mass-based Metabolite Identification using multiple databases

metabosearch

:: DESCRIPTION

MetaboSearch performs mass-based metabolite search simultaneously against the four major metabolite databases: Human Metabolome DataBase (HMDB), Madison Metabolomics Consortium Database (MMCD), Metlin, and LipidMaps.

::DEVELOPER

Ressom Lab 

:: SCREENSHOTS

metabosearch

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Java

:: DOWNLOAD

 metabosearch

:: MORE INFORMATION

Citation

PLoS One. 2012;7(6):e40096. doi: 10.1371/journal.pone.0040096. Epub 2012 Jun 29.
MetaboSearch: tool for mass-based metabolite identification using multiple databases.
Zhou B1, Wang J, Ressom HW.

MIDAS 1.1 – A Database-Searching Algorithm for Metabolite Identification in Metabolomics

MIDAS 1.1

:: DESCRIPTION

MIDAS (Metabolite Identification via Database Searching) is a database searching approach which can be used for metabolite identification in metabolomics by matching measured tandem mass spectra (MS/MS) against the predicted fragments of metabolites in a database.

::DEVELOPER

the Pan lab

:: SCREENSHOTS

N/a

:: REQUIREMENTS

  • Windows /  Mac OsX / Linux
  • Python

:: DOWNLOAD

 MIDAS

:: MORE INFORMATION

Citation

Anal Chem. 2014 Sep 11.
MIDAS: A Database-Searching Algorithm for Metabolite Identification in Metabolomics.
Wang Y1, Kora G, Bowen BP, Pan C.