SVMSEQ 1.0 – Protein Contact Prediction

SVMSEQ 1.0

:: DESCRIPTION

SVMSEQ is a new algorithm for protein residue-residue contact prediction using Support Vector Machines.

::DEVELOPER

Yang Zhang’s Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
:: DOWNLOAD

 SVMSEQ

:: MORE INFORMATION

Citation

S. Wu, Y. Zhang.
A comprehensive assessment of sequence-based and template-based methods for protein contact prediction.
Bioinformatics, vol 24, 924-931 (2008)

CONFOLD 1.0 – Residue-residue Contact-guided ab initio Protein Folding

CONFOLD 1.0

:: DESCRIPTION

CONFOLD is an ab initio protein folding method to build three-dimensional models using predicted contacts and secondary structures.

::DEVELOPER

Dr. Jianlin Cheng

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

CONFOLD

:: MORE INFORMATION

Citation

CONFOLD: Residue-residue contact-guided ab initio protein folding.
Adhikari B, Bhattacharya D, Cao R, Cheng J.
Proteins. 2015 May 13. doi: 10.1002/prot.24829.

CGAP – Contact Geometry Analysis Plugin for CMView

CGAP

:: DESCRIPTION

 CGAP (The Contact Geometry Analysis Plugin) is an experimental plugin for the CMView contact map analysis software. It provides rich, interactive tools for analysing the geometric environment of residue-residue contacts in protein structures.

::DEVELOPER

the Bioinformatics / Structural Proteomics group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java
  • CMView

:: DOWNLOAD

  CGAP

:: MORE INFORMATION