Tag: CLEVER

CLEVER Toolkit 2.4 – Clique Enumerating Variant Finder

CLEVER Toolkit 2.4

:: DESCRIPTION

The CLEVER Toolkit (CTK) is a collection of tools to discover and genotype structural variations in genomes from paired-end sequencing reads.

::DEVELOPER

The CWI Life Sciences and Health (LSH) group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • C++ Compiler
  • Python 

:: DOWNLOAD

CLEVER Toolkit

:: MORE INFORMATION

Citation:

Bioinformatics. 2012 Nov 15;28(22):2875-82. doi: 10.1093/bioinformatics/bts566. Epub 2012 Oct 11.
CLEVER: clique-enumerating variant finder.
Marschall T, Costa IG, Canzar S, Bauer M, Klau GW, Schliep A, Schönhuth A.

CLEVER 1.0 – Sequence based Approximation of Protein Energies

CLEVER 1.0

:: DESCRIPTION

CLEVER (Cluster Expansion) is an open-source package that can be used to convert any user-provided energy function into a linear combination of sequence-based terms.

::DEVELOPER

Keating Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • C++ Compiler

:: DOWNLOAD

 CLEVER

:: MORE INFORMATION

Citation:

Methods Enzymol. 2013;523:171-90. doi: 10.1016/B978-0-12-394292-0.00008-4.
Multistate protein design using CLEVER and CLASSY.
Negron C, Keating AE.